Node 73
Ancestral DNA sequence:
Probabilities of bases and MPB (most probable base) at each site.
Site	A	C	G	T	MPB	Probability
1	1	0	0	0	A	1
2	0	0	0	1	T	1
3	0	0	1	0	G	1
4	1	0	0	0	A	1
5	0	0	0	1	T	1
6	0	1	0	0	C	1
7	0.01	0	0.99	0	G	0.99
8	0	0	0	1	T	1
9	0.04	0	0.95	0.01	G	0.95
10	0	0.03	0	0.97	T	0.97
11	0	0	0	1	T	1
12	1	0	0	0	A	1
13	0	0	1	0	G	1
14	1	0	0	0	A	1
15	0	0.98	0.01	0.01	C	0.98
16	1	0	0	0	A	1
17	0.42	0	0.58	0	G	0.58
18	0	1	0	0	C	1
19	0	0.1	0	0.9	T	0.9
20	0	0	0	1	T	1
21	1	0	0	0	A	1
22	0	0	1	0	G	1
23	1	0	0	0	A	1
24	0.06	0	0.94	0	G	0.94
25	0	1	0	0	C	1
26	1	0	0	0	A	1
27	1	0	0	0	A	1
28	0	0	0	1	T	1
29	0	0	0	1	T	1
30	0	0.99	0	0.01	C	0.99
31	1	0	0	0	A	1
32	1	0	0	0	A	1
33	1	0	0	0	A	1
34	0.03	0.09	0.86	0.03	G	0.86
35	0.18	0.06	0.02	0.75	T	0.75
36	0.01	0	0.99	0	G	0.99
37	0	0	1	0	G	1
38	0	0	0	1	T	1
39	0.95	0	0.04	0	A	0.95
40	0	0	0	1	T	1
41	1	0	0	0	A	1
42	0	0.42	0	0.58	T	0.58
43	0	1	0	0	C	1
44	0	0	1	0	G	1
45	0	0.91	0	0.09	C	0.91
46	0.3	0	0.7	0	G	0.7
47	1	0	0	0	A	1
48	0	0.89	0	0.1	C	0.89
49	0	0	1	0	G	1
50	0	0	1	0	G	1
51	0	0.51	0	0.49	C	0.51
52	0	1	0	0	C	1
53	0	0	1	0	G	1
54	0	0.03	0	0.97	T	0.97
55	1	0	0	0	A	1
56	1	0	0	0	A	1
57	1	0	0	0	A	1
58	0	0	0	1	T	1
59	0	0	1	0	G	1
60	0	0	1	0	G	1
61	1	0	0	0	A	1
62	1	0	0	0	A	1
63	0	0.97	0	0.03	C	0.97
64	0	1	0	0	C	1
65	0	0	1	0	G	1
66	0	0.94	0	0.06	C	0.94
67	0	0	0	1	T	1
68	0	0	1	0	G	1
69	0	0	0	1	T	1
70	0	0	1	0	G	1
71	0	0	0	1	T	1
72	0.32	0.03	0.65	0.01	G	0.65
73	0	0	1	0	G	1
74	1	0	0	0	A	1
75	1	0	0	0	A	1
76	0	0	1	0	G	1
77	0	1	0	0	C	1
78	0.12	0.47	0.35	0.06	C	0.47
79	1	0	0	0	A	1
80	0	0	0	1	T	1
81	0	0	0	1	T	1
82	0.04	0	0.96	0	G	0.96
83	1	0	0	0	A	1
84	0.31	0.5	0.06	0.14	C	0.5
85	1	0	0	0	A	1
86	1	0	0	0	A	1
87	0	1	0	0	C	1
88	1	0	0	0	A	1
89	0	0	0	1	T	1
90	0	0.93	0	0.07	C	0.93
91	0	0	1	0	G	1
92	0.51	0.11	0.37	0.01	A	0.51
93	0	0.99	0	0.01	C	0.99
94	1	0	0	0	A	1
95	1	0	0	0	A	1
96	0	0.11	0	0.89	T	0.89
97	1	0	0	0	A	1
98	0	0	0	1	T	1
99	0	0.99	0	0.01	C	0.99
100	1	0	0	0	A	1
101	0.99	0	0.01	0	A	0.99
102	1	0	0	0	A	1
103	0	0	1	0	G	1
104	1	0	0	0	A	1
105	0	0.13	0	0.86	T	0.86
106	0	0	1	0	G	1
107	0	0	1	0	G	1
108	0	0.98	0.02	0	C	0.98
109	0	0	1	0	G	1
110	0	0	0	1	T	1
111	0.2	0.03	0.74	0.03	G	0.74
112	1	0	0	0	A	1
113	0	0	0	1	T	1
114	0	0	1	0	G	1
115	0	1	0	0	C	1
116	1	0	0	0	A	1
117	0	0.88	0	0.12	C	0.88
118	0	0	0	1	T	1
119	0	1	0	0	C	1
120	0.05	0.27	0.64	0.04	G	0.64
121	1	0	0	0	A	1
122	0	0	0	1	T	1
123	0	0.45	0	0.55	T	0.55
124	0	0	1	0	G	1
125	0	0	1	0	G	1
126	0	0.88	0	0.12	C	0.88
127	0	0	1	0	G	1
128	1	0	0	0	A	1
129	0	0	0	1	T	1
130	0	0	0	1	T	1
131	0	1	0	0	C	1
132	0.46	0.04	0.45	0.05	A	0.46
133	0	1	0	0	C	1
134	0	0	0	1	T	1
135	0	0	1	0	G	1
136	0	0	1	0	G	1
137	0	0	0	1	T	1
138	0	0.02	0	0.98	T	0.98
139	0	0	0	1	T	1
140	1	0	0	0	A	1
141	0	0.78	0	0.22	C	0.78
142	1	0	0	0	A	1
143	0	0	0	1	T	1
144	0	0	1	0	G	1
145	0.89	0	0.11	0	A	0.89
146	0	0	0	1	T	1
147	0	0.01	0	0.99	T	0.99
148	0	0	1	0	G	1
149	1	0	0	0	A	1
150	0.98	0	0.02	0	A	0.98
151	0	0	1	0	G	1
152	1	0	0	0	A	1
153	0	0.74	0	0.25	C	0.74
154	0	0	1	0	G	1
155	0	0	1	0	G	1
156	0	0.84	0	0.16	C	0.84
157	0.44	0	0.56	0	G	0.56
158	0	0.01	0	0.99	T	0.99
159	0	0.69	0	0.31	C	0.69
160	0.01	0	0.99	0	G	0.99
161	0	1	0	0	C	1
162	0.05	0.73	0.03	0.19	C	0.73
163	0.17	0.78	0.02	0.03	C	0.78
164	0.9	0	0.1	0	A	0.9
165	0.87	0.07	0.05	0.01	A	0.87
166	0.96	0.02	0.02	0	A	0.96
167	1	0	0	0	A	1
168	0.06	0.79	0.04	0.11	C	0.79
169	1	0	0	0	A	1
170	0	0.99	0	0	C	0.99
171	0	0.96	0	0.04	C	0.96
172	0	0	1	0	G	1
173	0.95	0	0.05	0	A	0.95
174	0.8	0.03	0.16	0.01	A	0.8
175	1	0	0	0	A	1
176	0.1	0.79	0	0.1	C	0.79
177	0	0.98	0.01	0.01	C	0.98
178	0	0	0	1	T	1
179	0	0	0	1	T	1
180	0	0.27	0	0.73	T	0.73
181	0.12	0	0.88	0	G	0.88
182	0.05	0.03	0	0.92	T	0.92
183	0.77	0.17	0.03	0.03	A	0.77
184	0	0	1	0	G	1
185	0	0	1	0	G	1
186	0	0.61	0	0.38	C	0.61
187	1	0	0	0	A	1
188	1	0	0	0	A	1
189	0	0.93	0	0.07	C	0.93
190	0	1	0	0	C	1
191	0	0	1	0	G	1
192	0	0.04	0	0.96	T	0.96
193	0	1	0	0	C	1
194	0	0	1	0	G	1
195	0	0.01	0	0.99	T	0.99
196	0	0	0	1	T	1
197	1	0	0	0	A	1
198	0	0.94	0	0.06	C	0.94
199	0	0	0	1	T	1
200	0	0	0	1	T	1
201	0	1	0	0	C	1
202	0	0	1	0	G	1
203	1	0	0	0	A	1
204	0	0.08	0	0.92	T	0.92
205	0.05	0	0.95	0	G	0.95
206	0	0	0	1	T	1
207	0	0.04	0.96	0	G	0.96
208	0	1	0	0	C	1
209	1	0	0	0	A	1
210	0	0.24	0	0.76	T	0.76
211	0	0	0	1	T	1
212	1	0	0	0	A	1
213	0	1	0	0	C	1
214	0	0	0	1	T	1
215	1	0	0	0	A	1
216	0	1	0	0	C	1
217	0	1	0	0	C	1
218	0	0	0	1	T	1
219	0.01	0.93	0.02	0.04	C	0.93
220	0	0	1	0	G	1
221	1	0	0	0	A	1
222	1	0	0	0	A	1
223	0	0	1	0	G	1
224	0	0	1	0	G	1
225	0	0.96	0	0.04	C	0.96
226	0	0.98	0.01	0.01	C	0.98
227	0	0	1	0	G	1
228	0	0.08	0	0.92	T	0.92
229	0	0	1	0	G	1
230	1	0	0	0	A	1
231	1	0	0	0	A	1
232	1	0	0	0	A	1
233	0	1	0	0	C	1
234	0	0.93	0.01	0.06	C	0.93
235	0	0	1	0	G	1
236	0	0	0	1	T	1
237	0.05	0.03	0.06	0.86	T	0.86
238	0	0	1	0	G	1
239	1	0	0	0	A	1
240	0.01	0	0.99	0	G	0.99
241	0	0	0	1	T	1
242	0	0	0	1	T	1
243	0	0.88	0.01	0.11	C	0.88
244	0	0	1	0	G	1
245	0	1	0	0	C	1
246	0.01	0.47	0.08	0.44	C	0.47
247	0.04	0	0.96	0	G	0.96
248	0.99	0	0.01	0	A	0.99
249	0.01	0.79	0	0.2	C	0.79
250	1	0	0	0	A	1
251	1	0	0	0	A	1
252	0.74	0	0.26	0	A	0.74
253	0.02	0.06	0.01	0.91	T	0.91
254	0	0.99	0	0.01	C	0.99
255	0.06	0.75	0.01	0.18	C	0.75
256	0.02	0	0.98	0	G	0.98
257	0.98	0	0.01	0	A	0.98
258	0.31	0.17	0.48	0.05	G	0.48
259	0	1	0	0	C	1
260	0	0	0	1	T	1
261	0.33	0.08	0.33	0.27	G	0.33
262	0.11	0	0.89	0	G	0.89
263	0.9	0.06	0.04	0.01	A	0.9
264	0.31	0.55	0.1	0.04	C	0.55
265	0.56	0.22	0.2	0.02	A	0.56
266	0	0.06	0	0.93	T	0.93
267	0.11	0.39	0.1	0.41	T	0.41
268	0	0	1	0	G	1
269	0	0	0	1	T	1
270	0.07	0	0.92	0	G	0.92
271	0.03	0.82	0.14	0.01	C	0.82
272	1	0	0	0	A	1
273	0.5	0	0.49	0	A	0.5
274	0	0	1	0	G	1
275	0	1	0	0	C	1
276	0	0.59	0	0.4	C	0.59
277	0	0	0	1	T	1
278	1	0	0	0	A	1
279	0	0.35	0	0.65	T	0.65
280	0	1	0	0	C	1
281	0	0	1	0	G	1
282	0.12	0.79	0.01	0.08	C	0.79
283	0	0	1	0	G	1
284	1	0	0	0	A	1
285	0	0.02	0	0.98	T	0.98
286	0	0	1	0	G	1
287	1	0	0	0	A	1
288	1	0	0	0	A	1
289	1	0	0	0	A	1
290	0	1	0	0	C	1
291	0	0.94	0	0.06	C	0.94
292	0	0	1	0	G	1
293	1	0	0	0	A	1
294	0	1	0	0	C	1
295	0	1	0	0	C	1
296	0	0	1	0	G	1
297	0.01	0.95	0	0.04	C	0.95
298	0	0	1	0	G	1
299	1	0	0	0	A	1
300	1	0	0	0	A	1
301	0	0.02	0	0.98	T	0.98
302	1	0	0	0	A	1
303	0.01	0.41	0	0.58	T	0.58
304	0	1	0	0	C	1
305	0	0	0	1	T	1
306	0.26	0	0.74	0	G	0.74
307	0.01	0.83	0	0.16	C	0.83
308	1	0	0	0	A	1
309	0.91	0.03	0.04	0.02	A	0.91
310	0	0	1	0	G	1
311	0	0	1	0	G	1
312	0	0.34	0	0.65	T	0.65
313	0.3	0.38	0.28	0.04	C	0.38
314	0.96	0.04	0.01	0	A	0.96
315	0.23	0.65	0.06	0.06	C	0.65
316	0	0	0	0	-	0
317	0	0	0	0	-	0
318	0	0	0	0	-	0
319	0	0	1	0	G	1
320	0	0	1	0	G	1
321	0.01	0.16	0.01	0.81	T	0.81
322	0	0.04	0.96	0	G	0.96
323	1	0	0	0	A	1
324	1	0	0	0	A	1
325	1	0	0	0	A	1
326	0	0.99	0	0.01	C	0.99
327	0.14	0.47	0.06	0.33	C	0.47
328	0	1	0	0	C	1
329	0.01	0	0.99	0	G	0.99
330	0	0.36	0	0.64	T	0.64
331	0.01	0.02	0.97	0	G	0.97
332	1	0	0	0	A	1
333	0.57	0	0.43	0	A	0.57
334	0	0.96	0	0.04	C	0.96
335	0	0	0	1	T	1
336	0.45	0.02	0.42	0.12	A	0.45
337	0	0.03	0	0.97	T	0.97
338	0.32	0	0.68	0	G	0.68
339	0	0.59	0	0.4	C	0.59
340	0	0	1	0	G	1
341	1	0	0	0	A	1
342	1	0	0	0	A	1
343	0	0	1	0	G	1
344	0	0	1	0	G	1
345	0	0.96	0	0.03	C	0.96
346	0	1	0	0	C	1
347	1	0	0	0	A	1
348	0.99	0	0.01	0	A	0.99
349	0	0	1	0	G	1
350	0	0	0	1	T	1
351	0.01	0	0.99	0	G	0.99
352	0	0	1	0	G	1
353	0	1	0	0	C	1
354	0.09	0.07	0.63	0.21	G	0.63
355	1	0	0	0	A	1
356	0	0	0	1	T	1
357	0	0	0	1	T	1
358	0	0	0	1	T	1
359	0	0	0	1	T	1
360	0	0.02	0	0.98	T	0.98
361	0	0	1	0	G	1
362	1	0	0	0	A	1
363	0.38	0.42	0.04	0.16	C	0.42
364	1	0	0	0	A	1
365	1	0	0	0	A	1
366	0	1	0	0	C	1
367	0.24	0.14	0.6	0.02	G	0.6
368	1	0	0	0	A	1
369	0	0.96	0	0.04	C	0.96
370	1	0	0	0	A	1
371	1	0	0	0	A	1
372	1	0	0	0	A	1
373	0	0	1	0	G	1
374	0	1	0	0	C	1
375	0.04	0.1	0.83	0.04	G	0.83
376	0	0	0	1	T	1
377	1	0	0	0	A	1
378	0	0.99	0	0.01	C	0.99
379	0	1	0	0	C	1
380	0	0	1	0	G	1
381	0.01	0.91	0	0.07	C	0.91
382	0	0	0	1	T	1
383	0	0	0	1	T	1
384	0	1	0	0	C	1
385	0	0.99	0	0.01	C	0.99
386	0.98	0	0.02	0	A	0.98
387	0	0.99	0	0.01	C	0.99
388	0	0	1	0	G	1
389	0	0	1	0	G	1
390	0	0.33	0	0.66	T	0.66
391	0	0	1	0	G	1
392	1	0	0	0	A	1
393	0	0.88	0	0.11	C	0.88
394	0.99	0	0.01	0	A	0.99
395	1	0	0	0	A	1
396	0	0.99	0	0.01	C	0.99
397	0	1	0	0	C	1
398	0	0	1	0	G	1
399	0.3	0.05	0.62	0.03	G	0.62
400	0	0	1	0	G	1
401	0	0	0	1	T	1
402	0.89	0.02	0.07	0.03	A	0.89
403	0	0	0	0	-	0
404	0	0	0	0	-	0
405	0	0	0	0	-	0
406	0	0	0	0	-	0
407	0	0	0	0	-	0
408	0	0	0	0	-	0
409	0.76	0.23	0.01	0.01	A	0.76
410	0	0	1	0	G	1
411	0.83	0.09	0.03	0.05	A	0.83
412	1	0	0	0	A	1
413	1	0	0	0	A	1
414	0.95	0	0.05	0	A	0.95
415	0	0	1	0	G	1
416	0	0	0	1	T	1
417	0.01	0.01	0.98	0	G	0.98
418	0	0	1	0	G	1
419	0	0	0	1	T	1
420	0	0	0.99	0	G	0.99
421	0	1	0	0	C	1
422	0	0	0	1	T	1
423	0.04	0	0.96	0	G	0.96
424	1	0	0	0	A	1
425	1	0	0	0	A	1
426	1	0	0	0	A	1
427	0	0	1	0	G	1
428	0	0	0	1	T	1
429	0.04	0.05	0.9	0.01	G	0.9
430	1	0	0	0	A	1
431	0	1	0	0	C	1
432	0.01	0.91	0.02	0.06	C	0.91
433	1	0	0	0	A	1
434	0	0	0	1	T	1
435	0	0.96	0	0.04	C	0.96
436	0	0	1	0	G	1
437	1	0	0	0	A	1
438	1	0	0	0	A	1
439	0	0	1	0	G	1
440	1	0	0	0	A	1
441	0	0	0	1	T	1
442	0	0	1	0	G	1
443	0	0	1	0	G	1
444	0	0.97	0	0.03	C	0.97
445	0	0	0	1	T	1
446	1	0	0	0	A	1
447	0	0.96	0	0.04	C	0.96
448	0	0	0	1	T	1
449	0	0	0	1	T	1
450	0	1	0	0	C	1
451	0	0.93	0	0.07	C	0.93
452	0	0	0	1	T	1
453	0.43	0.09	0.36	0.12	A	0.43
454	1	0	0	0	A	1
455	1	0	0	0	A	1
456	0	0.14	0	0.86	T	0.86
457	1	0	0	0	A	1
458	1	0	0	0	A	1
459	0.13	0	0.87	0	G	0.87
460	0	0	0	1	T	1
461	1	0	0	0	A	1
462	1	0	0	0	A	1


The most probable ancestral DNA sequence is:
ATGATCGTGTTAGACAGCTTAGAGCAATTCAAAGTGGTATATCGCGACGGCCGTAAATGGAACCGCTGTGTGGAAGCCATTGACAACATCGACAATATCAAAGATGGCGTGATGCACTCGATTGGCGATTCACTGGTTTACATGATTGAAGACGGCGTCGCCCAAAACACCGAAACCTTTGTAGGCAACCGTCGTTACTTCGATGTGCATTACTACCTCGAAGGCCGTGAAACCGTTGAGTTCGCCGACAAATCCGAGCTGGACATTGTGCAAGCCTATCGCGATGAAACCGACCGCGAATATCTGCAAGGTCAC---GGTGAAACCCGTGAACTATGCGAAGGCCAAGTGGCGATTTTTGACAACGACAAAGCGTACCGCTTCCACGGTGACAACCGGGTA------AGAAAAGTGGTGCTGAAAGTGACCATCGAAGATGGCTACTTCCTAAATAAGTAA

The most probable DNA sequence without gaps is:
ATGATCGTGTTAGACAGCTTAGAGCAATTCAAAGTGGTATATCGCGACGGCCGTAAATGGAACCGCTGTGTGGAAGCCATTGACAACATCGACAATATCAAAGATGGCGTGATGCACTCGATTGGCGATTCACTGGTTTACATGATTGAAGACGGCGTCGCCCAAAACACCGAAACCTTTGTAGGCAACCGTCGTTACTTCGATGTGCATTACTACCTCGAAGGCCGTGAAACCGTTGAGTTCGCCGACAAATCCGAGCTGGACATTGTGCAAGCCTATCGCGATGAAACCGACCGCGAATATCTGCAAGGTCACGGTGAAACCCGTGAACTATGCGAAGGCCAAGTGGCGATTTTTGACAACGACAAAGCGTACCGCTTCCACGGTGACAACCGGGTAAGAAAAGTGGTGCTGAAAGTGACCATCGAAGATGGCTACTTCCTAAATAAGTAA

The accuracy score for that sequence is 0.937924944812362

The accuracy score is defined as the average probability of
the most probable bases.  It is NOT the probability that the
most probable sequence is correct.  That probability is 4.54303372532375e-16.
The natural log of that probability is -35.3277664775751.

Ancestral Protein Sequence:
Column headings:
MPAA = most probable amino acid, pMPAA = probability of MPAA
MPAA2 = second most probable amino acid, pMPAA2 = probability of MPAA2
Ratio = pMPAA/pMPAA2,  Unreliable means Ratio <1.5

MPAA	pMPAA	MPAA2	pMPAA2	Ratio
M	1	A	0	9999	
I	1	A	0	9999	
V	0.99	M	0.0095	104.210526315789	
L	1	A	0	9999	
D	0.99	E	0.01	99	
S	0.58	N	0.42	1.38095238095238	Unreliable
L	1	A	0	9999	
E	1	A	0	9999	
Q	1	A	0	9999	
F	1	A	0	9999	
K	1	A	0	9999	
V	0.645	E	0.1548	4.16666666666667	
V	0.99	A	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
D	0.693	N	0.297	2.33333333333333	
G	1	A	0	9999	
R	1	A	0	9999	
K	1	A	0	9999	
W	1	A	0	9999	
N	1	A	0	9999	
R	1	A	0	9999	
C	1	A	0	9999	
V	1.01	A	0	9999	
E	1	A	0	9999	
A	1	R	0	9999	
I	1	A	0	9999	
D	0.6144	E	0.3552	1.72972972972973	
N	1	A	0	9999	
I	1	A	0	9999	
D	0.51	G	0.37	1.37837837837838	Unreliable
N	1	A	0	9999	
I	1	A	0	9999	
K	0.99	R	0.01	99	
D	0.99	A	0	9999	
G	1	A	0	9999	
V	1	A	0	9999	
M	1	A	0	9999	
H	1	A	0	9999	
S	1	A	0	9999	
I	1	A	0	9999	
G	1	A	0	9999	
D	1	A	0	9999	
S	1	A	0	9999	
L	1	A	0	9999	
V	1	A	0	9999	
Y	1	A	0	9999	
M	1	A	0	9999	
I	0.89	V	0.11	8.09090909090909	
E	1	A	0	9999	
D	0.99	A	0	9999	
G	1	A	0	9999	
V	0.5544	I	0.4356	1.27272727272727	Unreliable
A	0.99	T	0.01	99	
Q	0.64584	K	0.14076	4.58823529411765	
N	0.864	K	0.096	9	
T	0.99	A	0	9999	
E	0.912	G	0.05	18.24	
T	0.79	N	0.099	7.97979797979798	
F	1	A	0	9999	
V	0.8096	I	0.107088	7.56013745704467	
G	0.99	A	0	9999	
N	1	A	0	9999	
R	1	A	0	9999	
R	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
D	1	A	0	9999	
V	0.95	M	0.048	19.7916666666667	
H	1	A	0	9999	
Y	1	A	0	9999	
Y	1	A	0	9999	
L	1	A	0	9999	
E	1	A	0	9999	
G	1	A	0	9999	
R	0.98	C	0.01	98	
E	1	A	0	9999	
T	1	A	0	9999	
V	1	A	0	9999	
E	1	A	0	9999	
F	0.99	L	0.01	99	
A	1	R	0	9999	
D	0.940896	N	0.039204	24	
K	1	A	0	9999	
S	0.9009	P	0.0594	15.1666666666667	
E	0.758716	D	0.211288	3.59090909090909	
L	1.01	A	0	9999	
D	0.47259	E	0.32841	1.4390243902439	Unreliable
I	0.473928	L	0.210552	2.25088339222615	
V	0.99	A	0	9999	
Q	0.8118	E	0.1386	5.85714285714286	
A	0.99	R	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
D	1	A	0	9999	
E	1	A	0	9999	
T	1	A	0	9999	
D	1	A	0	9999	
R	1	A	0	9999	
E	1	A	0	9999	
Y	0.9702	H	0.0198	49	
L	1	A	0	9999	
Q	0.7885	X	0.152	5.1875	
G	0.99	A	0	9999	
H	0.259008	N	0.20448	1.26666666666667	Unreliable
	0	-	0	0
G	0.99	A	0	9999	
E	0.96	Q	0.04	24	
T	0.99	I	0.0094	105.31914893617	
R	0.99	H	0.01	99	
E	0.97	Q	0.02	48.5	
L	1.0044	F	0.0056	179.357142857143	
C	0.653004	Y	0.307296	2.125	
E	1	A	0	9999	
G	0.99	A	0	9999	
Q	1	A	0	9999	
V	1	A	0	9999	
A	1	R	0	9999	
I	1	A	0	9999	
F	1	A	0	9999	
D	0.58	E	0.42	1.38095238095238	Unreliable
N	1	A	0	9999	
D	0.6	N	0.24	2.5	
K	1	A	0	9999	
A	1.01	R	0	9999	
Y	1	A	0	9999	
R	0.99	A	0	9999	
F	1	A	0	9999	
H	0.9702	R	0.0198	49	
G	0.99	A	0	9999	
D	0.99	A	0	9999	
N	0.99	D	0.01	99	
R	1	A	0	9999	
V	1.01	A	0	9999	
	0	-	0	0
	0	-	0	0
R	0.8836	S	0.1064	8.30451127819549	
K	1	A	0	9999	
V	1	A	0	9999	
V	0.99	A	0	9999	
L	1	A	0	9999	
K	1	A	0	9999	
V	1	A	0	9999	
T	1	A	0	9999	
I	1	A	0	9999	
E	1	A	0	9999	
D	1	A	0	9999	
G	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
L	0.9853	F	0.0147	67.0272108843537	
N	1	A	0	9999	
K	1	A	0	9999	
X	1	A	0	9999	


The most probable ancestral protein sequence is:
MIVLDSLEQFKVVYRDGRKWNRCVEAIDNIDNIKDGVMHSIGDSLVYMIEDGVAQNTETFVGNRRYFDVHYYLEGRETVEFADKSELDIVQAYRDETDREYLQGH-GETRELCEGQVAIFDNDKAYRFHGDNRV--RKVVLKVTIEDGYFLNKX

The most probable ancestral protein sequence without gaps is:
MIVLDSLEQFKVVYRDGRKWNRCVEAIDNIDNIKDGVMHSIGDSLVYMIEDGVAQNTETFVGNRRYFDVHYYLEGRETVEFADKSELDIVQAYRDETDREYLQGHGETRELCEGQVAIFDNDKAYRFHGDNRVRKVVLKVTIEDGYFLNKX

The accuracy score for that sequence is 0.948617761589404

The accuracy score is defined as the average probability of
the most probable amino acids.  It is NOT the probability that the
most probable sequence is correct.  That probability is 4.21449827482501e-05
The natural log of that probability is -10.0743949138577.

